Thoth (tht) è il prodotto, PSD è il cliente. Nessun riferimento al contesto
clinico nel codice.
Rinomine:
- comando+package nsp→tht (dir nsp/→tht/, 46 import, pyproject entry point)
- gate nsp-gate.js→tht-gate.js (+ rewrite token, relayIfNspFails→relayIfThtFails)
- workspace chirone.{example,test}.yaml→tht.{example,test}.yaml (generici)
- env THOTH_→THT_ (19 var) + NSP_ stragglers (NSP_HARNESS_ROOT, NSP_SESSION)
- commenti/docstring chirone/psdwp3/policlinico neutralizzati ('the reference
implementation', 'the DWH')
Aggiunto [tool.setuptools.packages.find] include=['tht*'] (necessario: l'auto-
discovery rompeva con tht/ + workspaces/ come top-level multipli).
.env operatore aggiornato in-place (prefissi THT_, valori preservati, gitignored).
Verifica: pytest 109 passed, npm test 14 pass, tht phase meta --json OK, zero
residui nsp/THOTH_/NSP_/chirone nel package.
161 lines
6.6 KiB
Python
161 lines
6.6 KiB
Python
import logging
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from dataclasses import dataclass
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from sqlalchemy import Engine, text
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from tht.config import ExamplesConfig, LshConfig
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from tht.mschema.models import Annotations, PhysicalSchema
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logger = logging.getLogger(__name__)
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TEXT_TYPE_PREFIXES = ("text", "varchar", "character", "char")
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def is_text_type(pg_type: str) -> bool:
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return pg_type.lower().startswith(TEXT_TYPE_PREFIXES)
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def add_examples(engine: Engine, physical: PhysicalSchema, cfg: ExamplesConfig) -> None:
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"""Campiona i valori distinti piu' frequenti delle colonne testuali (in-place)."""
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schema = physical.db_schema
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with engine.connect() as conn:
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for table_name, table in physical.tables.items():
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for column_name, column in table.columns.items():
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if not is_text_type(column.type):
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continue
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q = text(f'''
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SELECT "{column_name}" FROM (
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SELECT "{column_name}", count(*) AS _freq
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FROM "{schema}"."{table_name}"
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WHERE "{column_name}" IS NOT NULL AND length("{column_name}") > 0
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GROUP BY "{column_name}"
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ORDER BY _freq DESC
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LIMIT :lim
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) AS sub
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''')
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try:
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rows = conn.execute(q, {"lim": cfg.max_per_column}).fetchall()
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except Exception as e: # colonna non leggibile: si salta, non si interrompe
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logger.warning("Campionamento saltato per %s.%s: %s", table_name, column_name, e)
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continue
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column.examples = [str(r[0]) for r in rows]
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def add_examples_rest(client, physical: PhysicalSchema, cfg: ExamplesConfig) -> None:
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"""Variante REST di add_examples: valori più frequenti via rpc `top_values`."""
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schema = physical.db_schema
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for table_name, table in physical.tables.items():
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for column_name, column in table.columns.items():
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if not is_text_type(column.type):
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continue
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rows = client.top_values(schema, table_name, column_name, cfg.max_per_column)
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column.examples = [str(r["value"]) for r in rows if r["value"] not in (None, "")]
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@dataclass
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class SkippedColumn:
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table: str
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column: str
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reason: str
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@dataclass
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class TruncatedColumn:
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table: str
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column: str
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indexed: int # quanti valori (i più frequenti) sono stati indicizzati
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def unique_values_for_lsh(
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engine: Engine,
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physical: PhysicalSchema,
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cfg: LshConfig,
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annotations: Annotations | None = None,
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) -> tuple[dict[str, dict[str, list[str]]], list[SkippedColumn], list[TruncatedColumn]]:
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"""Valori delle colonne testuali *eligible* per l'indice LSH.
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Indicizza solo colonne con eligibilità effettiva True (le `wide_text` sono escluse:
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vedi principio di column eligibility). Estrae i valori distinti *più frequenti*
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(ORDER BY frequenza); se superano `max_values_per_column` la colonna è troncata e
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segnalata (mai tagliata in silenzio).
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"""
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from tht.mschema.eligibility import effective_eligibility
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annotations = annotations or Annotations()
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schema = physical.db_schema
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values: dict[str, dict[str, list[str]]] = {}
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skipped: list[SkippedColumn] = []
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truncated: list[TruncatedColumn] = []
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with engine.connect() as conn:
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for table_name, table in physical.tables.items():
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table_ann = annotations.tables.get(table_name)
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for column_name, column in table.columns.items():
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if not is_text_type(column.type):
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continue
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ann_col = table_ann.columns.get(column_name) if table_ann else None
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if not effective_eligibility(column, ann_col)[0]:
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continue
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q = text(f'''
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SELECT "{column_name}" FROM (
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SELECT "{column_name}", count(*) AS _freq
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FROM "{schema}"."{table_name}"
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WHERE "{column_name}" IS NOT NULL AND length("{column_name}") > 0
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GROUP BY "{column_name}"
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ORDER BY _freq DESC, "{column_name}"
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LIMIT :lim
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) AS sub
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''')
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try:
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rows = conn.execute(q, {"lim": cfg.max_values_per_column}).fetchall()
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except Exception as e:
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skipped.append(SkippedColumn(table_name, column_name, f"errore: {e}"))
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continue
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vals = [str(r[0]) for r in rows]
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if not vals:
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continue
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values.setdefault(table_name, {})[column_name] = vals
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if len(vals) >= cfg.max_values_per_column:
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truncated.append(TruncatedColumn(table_name, column_name, len(vals)))
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return values, skipped, truncated
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def unique_values_for_lsh_rest(
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client,
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physical: PhysicalSchema,
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cfg: LshConfig,
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annotations: Annotations | None = None,
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) -> tuple[dict[str, dict[str, list[str]]], list[SkippedColumn], list[TruncatedColumn]]:
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"""Variante REST di unique_values_for_lsh: valori più frequenti via rpc `top_values`.
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Stessa logica di eligibility e di segnalazione del troncamento del transport diretto.
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"""
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from tht.mschema.eligibility import effective_eligibility
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annotations = annotations or Annotations()
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schema = physical.db_schema
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values: dict[str, dict[str, list[str]]] = {}
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skipped: list[SkippedColumn] = []
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truncated: list[TruncatedColumn] = []
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for table_name, table in physical.tables.items():
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table_ann = annotations.tables.get(table_name)
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for column_name, column in table.columns.items():
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if not is_text_type(column.type):
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continue
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ann_col = table_ann.columns.get(column_name) if table_ann else None
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if not effective_eligibility(column, ann_col)[0]:
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continue
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try:
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rows = client.top_values(
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schema, table_name, column_name, cfg.max_values_per_column
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)
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except Exception as e:
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skipped.append(SkippedColumn(table_name, column_name, f"errore: {e}"))
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continue
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vals = [str(r["value"]) for r in rows if r["value"] not in (None, "")]
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if not vals:
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continue
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values.setdefault(table_name, {})[column_name] = vals
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if len(vals) >= cfg.max_values_per_column:
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truncated.append(TruncatedColumn(table_name, column_name, len(vals)))
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return values, skipped, truncated
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