Add catalog-owned logical relationships and runtime snapshots, extend the database-management UI and validation coverage, and document the updated operational workflow.
Keep active sensitive-generation status in a tooltip and indicator, and update the layout E2E to follow the history action in its new database-scoped location.
Embedded in the Omics Portal the SPA sits to the right of the portal sidebar,
but dialogs used `fixed left-1/2` — centered on the whole browser window, so
gates rendered visibly off-center (overlapping the sidebar).
- AppShell publishes the app area's horizontal geometry (--app-area-left/width)
as CSS vars on <html> via ResizeObserver + window resize.
- DialogContent centers on those vars (falls back to the viewport when the app
is standalone, where the two coincide).
- ArtifactGateWidget: narrower — cap at 52rem instead of 70vw.
- tools/replay: resume now returns {id, alreadyActive} JSON — the post-f979ada
frontend reads result.alreadyActive and a bare 204 broke replay resume.
Verified on the replay harness: with a simulated 300px portal sidebar the gate
centers on the app area (center 790 = 300 + 980/2); standalone unchanged.
Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
Opening an in-progress session that has a live Pi runtime now reconnects to
its pending gate instead of the empty landing screen that read as "stopped".
Cold/completed sessions keep the read-only documents panel with its explicit
Resume, so a mere click never spawns a runtime. Backend GET /sessions now
reports a per-session `active` flag (live runtime bound) to drive this.
Also:
- "New session" now closes any open session detail panel (left box).
- The model-activity separator can be dragged to a full 50/50 split
(was capped at 576px); central-min still guards narrow viewports.
Test fixes uncovered along the way:
- Node 25 ships an experimental global localStorage that shadows jsdom's and
lacks clear(), failing every jsdom test at setup; install a spec-compliant
in-memory Storage (feature-detected, inert on CI/LTS).
- Fix 4 pre-existing session-mgmt tests that used an ambiguous getByText for a
session shown in both nav and header; target the nav item by test id.
Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
Timer now accumulates only while the harness works, pausing while a gate awaits
the reviewer and freezing when finalized (keyed per session, in-memory). Resume
now colours the re-entry phase immediately from the manifest's phase (1..8),
mirroring the F1 paint for new questions.
Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
- WorkflowBar: center the phase pills (add justify-center).
- tht-gate.js: the gate was sending the descriptive phase name (e.g.
"chiarimento") instead of the workflow.yaml id ("F1") in the widget's
`phase` field, so the frontend's F1..F8 match never hit and pills never
lit up. Rename phaseName -> phaseId, return p.id.
- CentralStatus: expand the live "working" tail from a single truncated
line to up to 5 lines (line-clamp-5 safety net for unbroken paragraphs).
- ModelActivityPanel: render the streamed tail through react-markdown +
remark-gfm instead of raw per-line <p> tags, so emphasis/headings render
and blank-line paragraph breaks (previously stripped) are preserved;
tail-cut now operates on paragraphs instead of physical lines.
Updated tests accordingly (WorkflowBar/CentralStatus/ModelActivityPanel/
AppShell.session-mgmt); full frontend suite (98/98) + harness gate node
tests (34/34) + tsc -b pass.
Co-Authored-By: Claude Sonnet 5 <noreply@anthropic.com>
B — WorkflowBar renders F1..F8 as colored ring-dots (no phase-name text):
green=done, amber=running (subtle pulse), red=error, gray=pending; green
connectors lead the active dot, each dot carries data-state. Lightweight
error signal: sessionStore gains `phaseError`, set when an info event has
level=error during the active phase, cleared on the next ui_request.
C — denser single-line session rows (inline status dot + name, py-1), a
3-level type hierarchy (L1 SESSIONS / L2 section+group headers / L3 names),
and the "No group" label removed (ungrouped render after the last group,
guarded so the empty-state still teaches when there are zero groups).
Live-verified with Playwright (all four dot states, sidebar hierarchy, and
E's deferred activity-panel check). Frontend 93/93, tsc -b clean.
Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
While the model works (active session, no pending widget), CentralStatus shows
a Claude-Code-style live status: a pulsing dot, elapsed seconds (ticking), and a
short tail of the model's current output — so the centre no longer looks stuck
during the long F1 loop. Verbose stream stays in the left panel. No tokens yet
(would need the SessionBridge to forward Pi usage).
Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
Codex
marcopan