refactor: remove workspace migration utilities
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@@ -0,0 +1,43 @@
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import { execFileSync } from "node:child_process";
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import { existsSync, readFileSync } from "node:fs";
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import { expect, test } from "vitest";
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test("declares a durable isolated registry volume and only read-only Git credential mounts", () => {
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const compose = readFileSync(new URL("../../compose.yaml", import.meta.url), "utf8");
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const development = readFileSync(new URL("../../docker-compose.dev.yml", import.meta.url), "utf8");
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const gitHttps = readFileSync(new URL("../../deploy/compose.git-https.yaml", import.meta.url), "utf8");
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const gitSsh = readFileSync(new URL("../../deploy/compose.git-ssh.yaml", import.meta.url), "utf8");
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const dockerfile = readFileSync(new URL("../../docker/core.Dockerfile", import.meta.url), "utf8");
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const smoke = readFileSync(new URL("../../scripts/workspace-registry-smoke.sh", import.meta.url), "utf8");
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for (const source of [compose, development]) {
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expect(source).toContain("THT_WORKSPACE_REGISTRY_ROOT: /data/workspace-registry");
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expect(source).toContain("THT_WORKSPACE_GIT_REMOTE: ${THT_WORKSPACE_GIT_REMOTE:?set THT_WORKSPACE_GIT_REMOTE}");
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expect(source).toContain("workspace-registry:/data/workspace-registry");
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}
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expect(compose).not.toMatch(/workspace-registry-git-(?:credentials|ca|ssh-key|known-hosts):ro/);
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expect(gitHttps).toMatch(/workspace-registry-git-credentials:ro/);
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expect(gitHttps).toMatch(/workspace-registry-git-ca:ro/);
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expect(gitSsh).toMatch(/workspace-registry-git-ssh-key:ro/);
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expect(gitSsh).toMatch(/workspace-registry-git-known-hosts:ro/);
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expect(dockerfile).toMatch(/mkdir -p[^\n]*\/data\/workspace-registry/);
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expect(dockerfile).toMatch(/chown -R thoth:thoth \/home\/thoth\/\.pi \/data/);
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expect(smoke).toContain('core_remote="/fixtures/offline.git"');
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expect(smoke).toContain('"degraded":true');
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expect(smoke).toContain('core_remote="/fixtures/remote.git"');
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});
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test("workspace registry smoke image cleanup is scoped to the per-run image identity", () => {
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const output = execFileSync("bash", ["scripts/workspace-registry-smoke.sh"], {
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cwd: new URL("../..", import.meta.url),
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env: { ...process.env, WORKSPACE_REGISTRY_SMOKE_SELF_TEST: "image-cleanup-identity" },
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encoding: "utf8",
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});
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expect(output).toContain("workspace registry smoke image cleanup identity self-test passed");
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});
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test("workspace migration source modules are absent from the live backend boundary", () => {
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expect(existsSync(new URL("../src/workspaces/migrate-legacy.ts", import.meta.url))).toBe(false);
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expect(existsSync(new URL("../src/workspaces/migrate-v2-qdrant.ts", import.meta.url))).toBe(false);
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});
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@@ -1,114 +0,0 @@
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import { execFileSync } from "node:child_process";
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import { existsSync, readFileSync, rmSync, writeFileSync } from "node:fs";
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import { mkdtemp } from "node:fs/promises";
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import { tmpdir } from "node:os";
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import { join } from "node:path";
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import { afterEach, expect, test } from "vitest";
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import {
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main,
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migrateLegacyWorkspace,
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writeMigratedWorkspace,
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} from "../src/workspaces/migrate-legacy.js";
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import * as workspaceSchema from "../src/workspaces/schema.js";
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import { parseWorkspaceYaml } from "../src/workspaces/schema.js";
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const temporaryRoots: string[] = [];
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afterEach(() => {
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temporaryRoots.splice(0).forEach((root) => rmSync(root, { recursive: true, force: true }));
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});
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function readFixture(name: string): string {
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return readFileSync(new URL(`../../harness/workspaces/${name}`, import.meta.url), "utf8");
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}
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test("migrates the current local PSD descriptor without copying secret values", () => {
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const result = migrateLegacyWorkspace(readFixture("local.yaml"), { id: "local", collection: "local" });
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expect(result.workspace.workspace).toMatchObject({ id: "local", schema_version: 3, language: "it" });
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expect(result.workspace).not.toHaveProperty("evidence");
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expect(JSON.stringify(result)).not.toMatch(/password:|api_key:|\$\{THT_/i);
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});
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test("migrates a legacy descriptor only with an explicit target collection into schema v3", () => {
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const result = migrateLegacyWorkspace(readFixture("tht.example.yaml"), { id: "example", collection: "shared" });
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const isOperationalWorkspace = (workspaceSchema as { isOperationalWorkspace?: unknown }).isOperationalWorkspace;
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expect(result.workspace.workspace.schema_version).toBe(3);
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expect(parseWorkspaceYaml(result.source).workspace.schema_version).toBe(3);
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expect(isOperationalWorkspace).toBeTypeOf("function");
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expect((isOperationalWorkspace as (workspace: ReturnType<typeof parseWorkspaceYaml>) => boolean)(
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parseWorkspaceYaml(result.source),
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)).toBe(true);
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expect(parseWorkspaceYaml(result.source)).toMatchObject({
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semantic_index: { vector_store: { engine: "qdrant", collection: "shared" } },
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});
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});
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test("requires an explicit target collection for legacy migration", () => {
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expect(() => migrateLegacyWorkspace(readFixture("local.yaml"), { id: "local" } as never)).toThrow(
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/collection/i,
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);
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});
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test("writes versioned repository artifacts atomically without replacing a prior migration", async () => {
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const root = await mkdtemp(join(tmpdir(), "thoth-workspace-migrate-"));
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temporaryRoots.push(root);
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const migration = migrateLegacyWorkspace(readFixture("local.yaml"), { id: "local", collection: "local" });
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const destination = await writeMigratedWorkspace(migration, root);
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expect(destination).toBe(join(root, "workspaces", "local.yaml"));
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expect(parseWorkspaceYaml(readFileSync(destination, "utf8"))).toMatchObject({ workspace: { id: "local" } });
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await expect(writeMigratedWorkspace(migration, root)).rejects.toThrow(/already exists/i);
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expect(existsSync(destination)).toBe(true);
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});
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test("CLI accepts an explicit valid ID when a legacy filename contains dots", async () => {
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const root = await mkdtemp(join(tmpdir(), "thoth-workspace-migrate-"));
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temporaryRoots.push(root);
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const input = join(root, "psd.clinical.yaml");
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writeFileSync(input, readFixture("local.yaml"));
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await main(["--input", input, "--output", root, "--id", "psd-clinical", "--collection", "psd-clinical"]);
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const destination = join(root, "workspaces", "psd-clinical.yaml");
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expect(parseWorkspaceYaml(readFileSync(destination, "utf8"))).toMatchObject({
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workspace: { id: "psd-clinical", schema_version: 3 },
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});
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});
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test("declares a durable isolated registry volume and only read-only Git credential mounts", () => {
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const compose = readFileSync(new URL("../../compose.yaml", import.meta.url), "utf8");
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const development = readFileSync(new URL("../../docker-compose.dev.yml", import.meta.url), "utf8");
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const gitHttps = readFileSync(new URL("../../deploy/compose.git-https.yaml", import.meta.url), "utf8");
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const gitSsh = readFileSync(new URL("../../deploy/compose.git-ssh.yaml", import.meta.url), "utf8");
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const dockerfile = readFileSync(new URL("../../docker/core.Dockerfile", import.meta.url), "utf8");
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const smoke = readFileSync(new URL("../../scripts/workspace-registry-smoke.sh", import.meta.url), "utf8");
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for (const source of [compose, development]) {
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expect(source).toContain("THT_WORKSPACE_REGISTRY_ROOT: /data/workspace-registry");
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expect(source).toContain("THT_WORKSPACE_GIT_REMOTE: ${THT_WORKSPACE_GIT_REMOTE:?set THT_WORKSPACE_GIT_REMOTE}");
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expect(source).toContain("workspace-registry:/data/workspace-registry");
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}
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expect(compose).not.toMatch(/workspace-registry-git-(?:credentials|ca|ssh-key|known-hosts):ro/);
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expect(gitHttps).toMatch(/workspace-registry-git-credentials:ro/);
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expect(gitHttps).toMatch(/workspace-registry-git-ca:ro/);
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expect(gitSsh).toMatch(/workspace-registry-git-ssh-key:ro/);
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expect(gitSsh).toMatch(/workspace-registry-git-known-hosts:ro/);
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expect(dockerfile).toMatch(/mkdir -p[^\n]*\/data\/workspace-registry/);
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expect(dockerfile).toMatch(/chown -R thoth:thoth \/home\/thoth\/\.pi \/data/);
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expect(smoke).toContain('core_remote="/fixtures/offline.git"');
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expect(smoke).toContain('"degraded":true');
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expect(smoke).toContain('core_remote="/fixtures/remote.git"');
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});
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test("workspace registry smoke image cleanup is scoped to the per-run image identity", () => {
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const output = execFileSync("bash", ["scripts/workspace-registry-smoke.sh"], {
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cwd: new URL("../..", import.meta.url),
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env: { ...process.env, WORKSPACE_REGISTRY_SMOKE_SELF_TEST: "image-cleanup-identity" },
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encoding: "utf8",
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});
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expect(output).toContain("workspace registry smoke image cleanup identity self-test passed");
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});
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@@ -1,102 +0,0 @@
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import { expect, test } from "vitest";
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import { migrateWorkspaceV2ToV3 } from "../src/workspaces/migrate-v2-qdrant.js";
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import { parseWorkspaceYaml } from "../src/workspaces/schema.js";
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const workspaceV2Yaml = `workspace:
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schema_version: 2
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id: psd-clinical
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name: Policlinico San Donato
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description: Clinical data warehouse workspace
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language: it
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dwh:
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engine: postgres
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database: postgres
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schema: datawarehouse
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supported_transports:
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- postgres_direct
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- rest_api
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semantic_index:
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vector_store:
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engine: pgvector
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database: postgres
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schema: vectors
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collection: clinical_documents
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dimensions: 768
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distance: inner_product
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supported_transports:
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- pgvector_direct
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- rest_api
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embedding:
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provider: openai_compatible
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model: text-embedding-3-large
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dimensions: 768
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llm_policy:
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default: zai/glm-5.2
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allowed:
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- zai/glm-5.2
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diagnostics:
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dwh_rest:
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method: POST
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path: /rpc/dwh
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auth: bearer
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response:
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database: database
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schema: schema
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vector_rest:
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metadata:
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method: GET
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path: /vector
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auth: bearer
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response:
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collection: collection
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dimensions: dimensions
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distance: distance
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embedding:
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method: GET
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path: /models
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auth: none
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response:
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model: model
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dimensions: dimensions
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`;
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test("migrates a schema v2 workspace to the internal qdrant schema v3 shape", () => {
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const legacy = parseWorkspaceYaml(workspaceV2Yaml);
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const migrated = migrateWorkspaceV2ToV3(legacy, "psd-clinical");
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expect(migrated).not.toHaveProperty("evidence");
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expect(migrated).toMatchObject({
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workspace: { schema_version: 3, id: "psd-clinical", name: "Policlinico San Donato" },
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dwh: legacy.dwh,
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semantic_index: {
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vector_store: {
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engine: "qdrant",
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collection: "psd-clinical",
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dimensions: 1024,
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distance: "cosine",
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},
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embedding: {
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provider: "ollama_internal",
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model: "qwen3-embedding:0.6b",
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dimensions: 1024,
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},
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},
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llm_policy: legacy.llm_policy,
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diagnostics: {
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dwh_rest: legacy.diagnostics?.dwh_rest,
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},
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});
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});
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test("drops vector and embedding diagnostics and transports during v2 to v3 migration", () => {
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const legacy = parseWorkspaceYaml(workspaceV2Yaml);
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const migrated = migrateWorkspaceV2ToV3(legacy, "psd-clinical");
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expect(migrated.diagnostics).toEqual({
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dwh_rest: legacy.diagnostics?.dwh_rest,
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});
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expect(migrated.semantic_index.vector_store).not.toHaveProperty("supported_transports");
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expect(migrated.semantic_index.embedding).not.toHaveProperty("timeout_ms");
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});
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