docs: document full and embedded rendering with server authentication
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@@ -23,6 +23,11 @@ Invalid values and unknown descriptor fields are rejected. In full mode, a known
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adapter setting is ignored and omitted from the resolved public configuration.
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Shell selection is independent of `profile` and authentication.
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Operational guide: [shell configuration and deployment](../../docs/operations/shell-and-localization.md).
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For Omics server identity, use [upstream integration](../../docs/install/authentication-upstream.md):
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the CLI's `auth configure` configures local/OIDC, not an upstream login. A mounted
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auth.yaml/runtime projection cannot coexist with core `AUTH_MODE=upstream`.
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New installations can select these values with `tht setup --shell-mode full
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--shell-default-locale en`. The optional `--shell-adapter omics-portal` selects the
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embedded adapter explicitly. Corresponding environment answers are
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