docs: separate public manual from internal project documentation

docs/operations/database-management.md

@@ -67,7 +67,7 @@ SSH uses a private key, optional key passphrase, mandatory `known_hosts`, and op
 TLS CA/server name. REST prefers `POST /rpc/schema_snapshot`; when it is absent, the catalog may
 use the same strict v1 snapshot through one read-only `POST /rpc/run_query`. An unavailable
 capability, malformed snapshot, or connector error applies no catalog changes. See the
-[schema snapshot contract](../contracts/catalog-schema-snapshot.md).
+[schema snapshot contract](https://git.tylconsulting.it/mptyl/ThothII/src/branch/main/docs/contracts/catalog-schema-snapshot.md).
 
 ## Synchronize authoritative schema metadata
 
@@ -176,6 +176,6 @@ atomic operation. It skips empty generated descriptions, reports aggregate copie
 counts, and retains the generated text. Because this can replace reviewed descriptions, the
 interface requires explicit confirmation before applying it.
 
-The decisions behind this surface are [ADRs 0001–0011](../adr/0001-postgres-metadata-catalog.md)
+The decisions behind this surface are [ADRs 0001–0011](https://git.tylconsulting.it/mptyl/ThothII/src/branch/main/docs/adr/0001-postgres-metadata-catalog.md)
 and the detailed acceptance record is
-[AI catalog description generation acceptance](../testing/2026-08-29-ai-catalog-description-generation-acceptance.md).
+[AI catalog description generation acceptance](https://git.tylconsulting.it/mptyl/ThothII/src/branch/main/docs/testing/2026-08-29-ai-catalog-description-generation-acceptance.md).

docs/operations/sensitivity-analysis.md

@@ -118,12 +118,12 @@ other CPU workloads.
 Run the first evaluation in shadow mode: read the source with its existing read-only role, do not
 save proposed flags, and report only aggregate counts, rule IDs, coverage, and timings. Never copy
 matched values into test output. Use a separately approved, labeled Italian corpus to calculate
-precision and recall; raw PSD values must remain inside the authorized environment.
+precision and recall; source values must remain inside the authorized environment.
 
 Inside the configured core runtime, the non-mutating command is:
 
 ```bash
-npm run sensitivity:shadow -- psd-clinical
+npm run sensitivity:shadow -- <workspace-id>
 ```
 
 It reads catalog metadata and source values but emits one aggregate JSON object with no database,
@@ -139,12 +139,7 @@ Enabling NER by default requires all of these gates:
 If a gate fails, leave NER disabled. The deterministic policy remains available and produces the
 binary draft from its scan coverage; no content is sent to an internal or external LLM.
 
-The first aggregate PSD shadow comparison is recorded in
-[`2026-09-02-psd-sensitivity-shadow.md`](../reports/2026-09-02-psd-sensitivity-shadow.md). On the
-local CPU runner, NER found additional entities but reduced total coverage under the superseded
-global deadline. The v2 benchmark removed that confounder: CPU NER added 18 sensitive proposals and
-increased the warm analysis time from 50.1 to 61.3 seconds. It remains opt-in until a labeled Italian
-evaluation establishes that the additional findings justify their false-positive rate and cost.
-The deterministic progressive PSD run is recorded in
-[`2026-09-03-psd-progressive-sensitivity-shadow.md`](../reports/2026-09-03-psd-progressive-sensitivity-shadow.md):
-both deterministic and CPU-NER profiles assessed all 2,275 columns with zero `unknown` decisions.
+Benchmarks from a particular installation are not a guarantee for another database or machine.
+NER remains opt-in until an approved evaluation establishes that additional findings justify
+their false-positive rate and operational cost. Keep benchmark and release records with the
+installation's technical evidence, separate from this operator procedure.

docs/operations/workspaces.md

@@ -73,9 +73,9 @@ only that run's safe stage, error code, and finish time; use `docker compose log
 corresponding service log.
 
 The contract gives exact validation, exit code, and JSON rules in
-[Workspace preprocessing CLI](../contracts/workspace-preprocessing-cli.md). For Evidence source
+[Workspace preprocessing CLI](https://git.tylconsulting.it/mptyl/ThothII/src/branch/main/docs/contracts/workspace-preprocessing-cli.md). For Evidence source
 forms and the schema-v4 descriptor contract, see
-[Workspace Evidence v3](../contracts/workspace-evidence-v3.md).
+[Workspace Evidence v3](https://git.tylconsulting.it/mptyl/ThothII/src/branch/main/docs/contracts/workspace-evidence-v3.md).
 
 ## Transport and revision rules